STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS92243.1Iron complex outermembrane recepter protein. (809 aa)    
Predicted Functional Partners:
SDS92279.1
FecR family protein.
 
 
 0.876
SDT49219.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.748
SDS92306.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.742
SDS50664.1
FecR family protein.
 
 
 0.738
SDR90831.1
FecR family protein.
 
 
 0.733
SDS54847.1
FecR family protein.
 
 
 0.732
SDT05212.1
FecR family protein.
 
 
 0.732
SDS05575.1
FecR family protein.
 
 
 0.730
SDT56981.1
FecR family protein.
 
 
 0.708
SDT56002.1
FecR family protein.
 
 
 0.706
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.