STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS97083.1Type II/III secretion system short domain-containing protein. (245 aa)    
Predicted Functional Partners:
SDT65869.1
Type III secretion protein R.
  
 
 0.864
SDT65965.1
Type III secretion protein J.
  
 
 0.860
SDT65889.1
Type III secretion protein T.
  
 
 0.853
SDT65880.1
Type III secretion protein S.
  
 
 0.838
SDT65805.1
Type III secretion protein V.
  
 
 0.806
SDR88752.1
Alginate biosynthesis protein AlgK.
  
     0.745
SDR88652.1
poly(beta-D-mannuronate) C5 epimerase.
  
     0.700
SDT29677.1
Arc-like DNA binding domain-containing protein.
  
     0.698
SDT35140.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
  
     0.679
SDT34015.1
Protein of unknown function.
  
     0.678
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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