STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT06243.15-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (256 aa)    
Predicted Functional Partners:
SDT06334.1
5-carboxymethyl-2-hydroxymuconate delta isomerase.
 
 
 0.947
SDT06204.1
5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG1 subunit.
 
  
 
0.934
SDS75873.1
5-carboxymethyl-2-hydroxymuconate isomerase.
 
 
 0.915
SDT06652.1
5-carboxymethyl-2-hydroxymuconate isomerase.
 
 
 0.909
hpaH
2-oxohept-3-enedioate hydratase.
 
 
 0.897
SDT06312.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.882
hpaE
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
   0.873
SDS09118.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
 
 0.859
SDS75945.1
2-oxo-hept-3-ene-1,7-dioate hydratase.
 
 
 0.850
SDT06161.1
4-hydroxyphenylacetate catabolism regulatory protein HpaA.
 
  
 0.809
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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