STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpaI2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family. (267 aa)    
Predicted Functional Partners:
hpaH
2-oxohept-3-enedioate hydratase.
 
 0.986
SDS75945.1
2-oxo-hept-3-ene-1,7-dioate hydratase.
 
 0.951
SDT06453.1
Succinate semialdehyde dehydrogenase.
  
 
  0.889
SDT06334.1
5-carboxymethyl-2-hydroxymuconate delta isomerase.
 
  
 0.877
SDT06312.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.853
SDS74808.1
2-keto-4-pentenoate hydratase.
 
 
 0.814
SDT06360.1
Sugar phosphate permease.
  
  
 0.775
SDT03473.1
Succinate semialdehyde dehydrogenase.
  
 
  0.769
hpaD
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.737
SDS75873.1
5-carboxymethyl-2-hydroxymuconate isomerase.
 
  
 0.727
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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