STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT08825.1Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase). (447 aa)    
Predicted Functional Partners:
SDS42836.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
   
 0.950
SDT08865.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
    0.851
SDT34467.1
NAD(P)H-flavin reductase.
  
 
 0.630
SDT52736.1
FMN reductase.
  
 0.630
SDT53220.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.630
SDT10191.1
Pyochelin synthetase.
   
 0.626
SDT10367.1
Methyltransferase domain-containing protein.
   
 0.626
SDT10403.1
Pyochelin synthetase.
   
 0.626
SDT58910.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
   
 0.625
SDS31100.1
Dihydroorotate oxidase B, catalytic subunit.
    
 0.611
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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