Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDS42836.1 | SDT12778.1 | SAMN04490182_1517 | SAMN04490182_3364 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Hypothetical protein. | 0.465 |
SDS42836.1 | SDT13556.1 | SAMN04490182_1517 | SAMN04490182_3389 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.594 |
SDS42836.1 | fliA | SAMN04490182_1517 | SAMN04490182_3648 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.525 |
SDT12778.1 | SDS42836.1 | SAMN04490182_3364 | SAMN04490182_1517 | Hypothetical protein. | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | 0.465 |
SDT12778.1 | SDT13556.1 | SAMN04490182_3364 | SAMN04490182_3389 | Hypothetical protein. | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.554 |
SDT12778.1 | SDT56218.1 | SAMN04490182_3364 | SAMN04490182_5434 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.539 |
SDT12778.1 | SDT64156.1 | SAMN04490182_3364 | SAMN04490182_6051 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.539 |
SDT12778.1 | csrA | SAMN04490182_3364 | SAMN04490182_3365 | Hypothetical protein. | Carbon storage regulator, CsrA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.535 |
SDT12778.1 | fliA | SAMN04490182_3364 | SAMN04490182_3648 | Hypothetical protein. | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.750 |
SDT12778.1 | rlpA-2 | SAMN04490182_3364 | SAMN04490182_4724 | Hypothetical protein. | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.448 |
SDT13556.1 | SDS42836.1 | SAMN04490182_3389 | SAMN04490182_1517 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | 0.594 |
SDT13556.1 | SDT12778.1 | SAMN04490182_3389 | SAMN04490182_3364 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Hypothetical protein. | 0.554 |
SDT56218.1 | SDT12778.1 | SAMN04490182_5434 | SAMN04490182_3364 | N-acetylmuramoyl-L-alanine amidase. | Hypothetical protein. | 0.539 |
SDT56218.1 | SDT64156.1 | SAMN04490182_5434 | SAMN04490182_6051 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.944 |
SDT56218.1 | rlpA-2 | SAMN04490182_5434 | SAMN04490182_4724 | N-acetylmuramoyl-L-alanine amidase. | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.965 |
SDT64156.1 | SDT12778.1 | SAMN04490182_6051 | SAMN04490182_3364 | N-acetylmuramoyl-L-alanine amidase. | Hypothetical protein. | 0.539 |
SDT64156.1 | SDT56218.1 | SAMN04490182_6051 | SAMN04490182_5434 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.944 |
SDT64156.1 | rlpA-2 | SAMN04490182_6051 | SAMN04490182_4724 | N-acetylmuramoyl-L-alanine amidase. | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.965 |
csrA | SDT12778.1 | SAMN04490182_3365 | SAMN04490182_3364 | Carbon storage regulator, CsrA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Hypothetical protein. | 0.535 |
fliA | SDS42836.1 | SAMN04490182_3648 | SAMN04490182_1517 | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | 0.525 |
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