Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDT05554.1 | SDT28042.1 | SAMN04490182_3152 | SAMN04490182_3909 | DnaJ central domain-containing protein. | Hypothetical protein. | 0.788 |
SDT05554.1 | SDT41415.1 | SAMN04490182_3152 | SAMN04490182_4531 | DnaJ central domain-containing protein. | D-lactate dehydrogenase. | 0.611 |
SDT05554.1 | SDT47415.1 | SAMN04490182_3152 | SAMN04490182_4836 | DnaJ central domain-containing protein. | SSU ribosomal protein S10P. | 0.941 |
SDT05554.1 | SDT47433.1 | SAMN04490182_3152 | SAMN04490182_4837 | DnaJ central domain-containing protein. | Translation elongation factor 1A (EF-1A/EF-Tu). | 0.492 |
SDT05554.1 | rplE | SAMN04490182_3152 | SAMN04490182_4823 | DnaJ central domain-containing protein. | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.967 |
SDT05554.1 | rplM | SAMN04490182_3152 | SAMN04490182_0079 | DnaJ central domain-containing protein. | LSU ribosomal protein L13P /type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.943 |
SDT05554.1 | rplN | SAMN04490182_3152 | SAMN04490182_4825 | DnaJ central domain-containing protein. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.972 |
SDT05554.1 | rpsB | SAMN04490182_3152 | SAMN04490182_0494 | DnaJ central domain-containing protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.956 |
SDT05554.1 | rpsC | SAMN04490182_3152 | SAMN04490182_4829 | DnaJ central domain-containing protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.981 |
SDT05554.1 | rpsS | SAMN04490182_3152 | SAMN04490182_4831 | DnaJ central domain-containing protein. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.859 |
SDT28042.1 | SDT05554.1 | SAMN04490182_3909 | SAMN04490182_3152 | Hypothetical protein. | DnaJ central domain-containing protein. | 0.788 |
SDT28042.1 | SDT41415.1 | SAMN04490182_3909 | SAMN04490182_4531 | Hypothetical protein. | D-lactate dehydrogenase. | 0.705 |
SDT28042.1 | SDT47415.1 | SAMN04490182_3909 | SAMN04490182_4836 | Hypothetical protein. | SSU ribosomal protein S10P. | 0.841 |
SDT28042.1 | SDT47433.1 | SAMN04490182_3909 | SAMN04490182_4837 | Hypothetical protein. | Translation elongation factor 1A (EF-1A/EF-Tu). | 0.687 |
SDT28042.1 | rplE | SAMN04490182_3909 | SAMN04490182_4823 | Hypothetical protein. | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.702 |
SDT28042.1 | rplM | SAMN04490182_3909 | SAMN04490182_0079 | Hypothetical protein. | LSU ribosomal protein L13P /type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.692 |
SDT28042.1 | rplN | SAMN04490182_3909 | SAMN04490182_4825 | Hypothetical protein. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.798 |
SDT28042.1 | rpsB | SAMN04490182_3909 | SAMN04490182_0494 | Hypothetical protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.681 |
SDT28042.1 | rpsC | SAMN04490182_3909 | SAMN04490182_4829 | Hypothetical protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.689 |
SDT28042.1 | rpsS | SAMN04490182_3909 | SAMN04490182_4831 | Hypothetical protein. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.699 |
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