STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT36063.1GntR family transcriptional regulator. (252 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.958
SDT36105.1
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing).
 
  
 0.905
ptsP-2
Phosphocarrier protein.
 
  
 0.876
SDT36155.1
PTS system, N-acetylglucosamine-specific IIC component.
 
  
 0.821
treR
GntR family transcriptional regulator, trehalose operon transcriptional repressor.
  
     0.729
ptsP-3
Phosphocarrier protein FPr.
 
  
 0.641
SDS09461.1
AraC family transcriptional regulator, transcriptional activator of pobA.
  
  
 0.492
hpaA
AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein.
  
  
 0.492
SDS82817.1
AraC-type DNA-binding protein.
  
  
 0.492
SDT06119.1
AraC-type DNA-binding protein.
  
  
 0.492
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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