STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT49635.1Fe-S oxidoreductase. (648 aa)    
Predicted Functional Partners:
SDT49603.1
Electron transfer flavoprotein beta subunit.
 
  
 0.981
SDT49619.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
  
 0.979
SDT49668.1
Hypothetical protein.
 
  
 0.956
SDT49651.1
2,4-dienoyl-CoA reductase.
 
 
 0.944
SDT49564.1
Ferredoxin-NADP reductase.
 
  
 0.927
SDT49696.1
Membrane dipeptidase.
 
    0.908
SDT49447.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 
 0.892
SDT62996.1
Glutamate synthase (NADPH) large subunit.
    
 0.885
SDT66293.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.878
SDT34491.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.877
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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