STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT51581.1DNA-binding transcriptional regulator, AcrR family. (223 aa)    
Predicted Functional Partners:
SDT51590.1
Coniferyl-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.843
SDT51602.1
Hypothetical protein.
 
  
 0.812
SDT51626.1
Choline dehydrogenase.
 
 
 0.768
SDT51567.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
       0.692
SDT62645.1
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.655
SDT62632.1
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.632
SDS23003.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.590
SDT64638.1
Triacylglycerol lipase.
  
   
 0.482
SDS42836.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
     
 0.469
SDS77630.1
Hypothetical protein.
  
     0.466
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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