Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDS28666.1 | SDT53948.1 | SAMN04490182_1185 | SAMN04490182_5283 | Diaminopimelate epimerase. | Hypothetical protein. | 0.712 |
SDS28666.1 | dapF | SAMN04490182_1185 | SAMN04490182_5282 | Diaminopimelate epimerase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.918 |
SDS28666.1 | lysA | SAMN04490182_1185 | SAMN04490182_5281 | Diaminopimelate epimerase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.947 |
SDT45206.1 | SDT53948.1 | SAMN04490182_4714 | SAMN04490182_5283 | DNA polymerase III, delta subunit. | Hypothetical protein. | 0.654 |
SDT51044.1 | SDT53948.1 | SAMN04490182_5081 | SAMN04490182_5283 | Protein TonB. | Hypothetical protein. | 0.689 |
SDT51044.1 | SDT62834.1 | SAMN04490182_5081 | SAMN04490182_5919 | Protein TonB. | Cell division protein FtsN. | 0.587 |
SDT51044.1 | SDT65067.1 | SAMN04490182_5081 | SAMN04490182_6155 | Protein TonB. | MJ0042 family finger-like domain-containing protein. | 0.766 |
SDT53902.1 | SDT53948.1 | SAMN04490182_5280 | SAMN04490182_5283 | Predicted small lipoprotein YifL. | Hypothetical protein. | 0.773 |
SDT53902.1 | SDT53977.1 | SAMN04490182_5280 | SAMN04490182_5285 | Predicted small lipoprotein YifL. | Putative hydrolase of the HAD superfamily. | 0.773 |
SDT53902.1 | dapF | SAMN04490182_5280 | SAMN04490182_5282 | Predicted small lipoprotein YifL. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.879 |
SDT53902.1 | lysA | SAMN04490182_5280 | SAMN04490182_5281 | Predicted small lipoprotein YifL. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.864 |
SDT53902.1 | xerC | SAMN04490182_5280 | SAMN04490182_5284 | Predicted small lipoprotein YifL. | Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.821 |
SDT53948.1 | SDS28666.1 | SAMN04490182_5283 | SAMN04490182_1185 | Hypothetical protein. | Diaminopimelate epimerase. | 0.712 |
SDT53948.1 | SDT45206.1 | SAMN04490182_5283 | SAMN04490182_4714 | Hypothetical protein. | DNA polymerase III, delta subunit. | 0.654 |
SDT53948.1 | SDT51044.1 | SAMN04490182_5283 | SAMN04490182_5081 | Hypothetical protein. | Protein TonB. | 0.689 |
SDT53948.1 | SDT53902.1 | SAMN04490182_5283 | SAMN04490182_5280 | Hypothetical protein. | Predicted small lipoprotein YifL. | 0.773 |
SDT53948.1 | SDT53977.1 | SAMN04490182_5283 | SAMN04490182_5285 | Hypothetical protein. | Putative hydrolase of the HAD superfamily. | 0.837 |
SDT53948.1 | SDT62834.1 | SAMN04490182_5283 | SAMN04490182_5919 | Hypothetical protein. | Cell division protein FtsN. | 0.636 |
SDT53948.1 | SDT65067.1 | SAMN04490182_5283 | SAMN04490182_6155 | Hypothetical protein. | MJ0042 family finger-like domain-containing protein. | 0.673 |
SDT53948.1 | dapF | SAMN04490182_5283 | SAMN04490182_5282 | Hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.976 |
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