STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT55062.1Type VI secretion system protein ImpC. (498 aa)    
Predicted Functional Partners:
SDT55048.1
Type VI secretion system protein ImpB.
 0.999
SDS87091.1
Type VI secretion system protein ImpB.
 
 0.998
SDT55077.1
Type VI secretion system secreted protein Hcp.
 
 0.995
SDT54969.1
Type VI secretion system protein ImpK.
 
  
 0.993
SDT03949.1
Type VI secretion system secreted protein Hcp.
 
 0.992
SDS86724.1
Type VI secretion system protein ImpK.
 
  
 0.991
SDS87167.1
Type VI secretion system secreted protein Hcp.
 
 0.985
clpV
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 
 0.982
SDT55032.1
Type VI secretion system protein ImpA.
 
 
 0.974
SDT55118.1
Type VI secretion system protein ImpH.
 
 
 0.955
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.