STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT55227.1rubredoxin-NAD+ reductase; Belongs to the FAD-dependent oxidoreductase family. (382 aa)    
Predicted Functional Partners:
SDT55241.1
Rubredoxin.
 0.999
SDS82196.1
Nitrite reductase (NADH) small subunit.
 
 0.948
SDS39370.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
  
 0.934
SDS89083.1
Hemerythrin HHE cation binding domain-containing protein.
  
 0.906
SDT40288.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
  
 0.906
SDS82269.1
Oxidoreductase NAD-binding domain-containing protein.
 
 
 0.903
SDT38385.1
Nitric oxide dioxygenase; Belongs to the globin family.
  
 
 0.898
SDS89505.1
Nitrate reductase alpha subunit.
  
 
 0.845
SDT03162.1
Hypothetical protein; Manually curated.
  
 
 0.790
SDS76694.1
Vanillate O-demethylase ferredoxin subunit.
  
 
 0.758
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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