STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT58455.1Uncharacterized membrane protein YtjA, UPF0391 family. (54 aa)    
Predicted Functional Partners:
SDT31656.1
Uncharacterized conserved protein YjbJ, UPF0337 family.
  
  
 0.930
SDT58470.1
Inhibitor of vertebrate lysozyme (Ivy).
  
  
 0.897
SDT40685.1
Hyperosmotically inducible protein.
  
  
 0.881
SDS19889.1
Protein of unknown function.
   
    0.840
SDS72516.1
Protein of unknown function.
   
    0.819
SDT64627.1
Bacterioferritin.
  
    0.768
SDT19105.1
Protein of unknown function.
   
    0.761
SDS22218.1
Hypothetical protein.
  
  
 0.759
SDR86436.1
Osmotically-inducible protein OsmY, contains BON domain.
  
  
 0.746
SDT58440.1
Hypothetical protein.
     
 0.680
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.