STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT58529.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (312 aa)    
Predicted Functional Partners:
SDT58556.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.999
SDT58540.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.998
SDT58514.1
Cholesterol transport system auxiliary component.
 
  0.985
SDR84828.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
  
 0.982
SDR84784.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.980
SDT21196.1
Chemotaxis protein MotB.
   
   0.917
SDR84890.1
Phospholipid transport system substrate-binding protein.
  
 0.898
SDS08613.1
rsbT antagonist protein RsbS.
  
  0.886
SDS08663.1
rsbT co-antagonist protein RsbR.
  
  0.886
SDS12476.1
Anti-anti-sigma factor.
  
  0.886
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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