STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT60272.1Polar amino acid transport system ATP-binding protein. (258 aa)    
Predicted Functional Partners:
SDT60237.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
 0.998
SDT60254.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.998
SDT60288.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
 0.956
SDR94556.1
L-glutamate ABC transporter membrane protein.
 0.953
SDS83703.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.944
SDT60521.1
L-cystine ABC transporter membrane protein.
 0.942
SDR94642.1
L-glutamate ABC transporter membrane protein.
 
 0.941
SDS55387.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.940
SDT62450.1
Amino acid ABC transporter membrane protein, PAAT family.
 0.932
SDS87816.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 0.930
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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