STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT61663.1Amino acid ABC transporter ATP-binding protein, PAAT family. (257 aa)    
Predicted Functional Partners:
SDT61652.1
Polar amino acid transport system substrate-binding protein.
 
 
 0.994
SDT61638.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
 
 0.993
SDT61622.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.990
SDT30118.1
L-arginine ABC transporter membrane protein.
 
 0.899
SDS78951.1
Histidine transport system permease protein.
 
 0.897
SDS01727.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.894
SDS78889.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
 
 0.894
SDT30145.1
L-arginine ABC transporter membrane protein.
 
 
 0.894
SDS01769.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
 0.893
SDT30166.1
Arginine/ornithine transport system substrate-binding protein.
 
 
 0.824
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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