STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT62145.1Uncharacterized membrane protein. (1175 aa)    
Predicted Functional Partners:
SDT62157.1
Protein of unknown function.
 
  
 0.974
SDT49297.1
Inner membrane protein.
  
     0.703
SDT49314.1
Two-component system, OmpR family, sensor histidine kinase CreC.
  
     0.649
SDT34272.1
Hypothetical protein.
  
     0.608
SDT47877.1
Uncharacterized membrane protein YhaH, DUF805 family.
  
     0.604
SDT34301.1
Protein of unknown function.
  
     0.596
fbp
D-fructose 1,6-bisphosphatase; Belongs to the FBPase class 1 family.
       0.590
SDT30027.1
Leucine Rich Repeat.
  
     0.565
SDT62130.1
Starch phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
       0.553
SDS66234.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
  
     0.551
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.