Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDS59498.1 | SDT47715.1 | SAMN04490182_1905 | SAMN04490182_4858 | Signal transduction histidine kinase. | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | 0.508 |
SDS59498.1 | SDT61229.1 | SAMN04490182_1905 | SAMN04490182_5774 | Signal transduction histidine kinase. | ADP-ribose diphosphatase. | 0.508 |
SDS59498.1 | nudF | SAMN04490182_1905 | SAMN04490182_6028 | Signal transduction histidine kinase. | ADP-ribose pyrophosphatase. | 0.809 |
SDS59498.1 | prs | SAMN04490182_1905 | SAMN04490182_6262 | Signal transduction histidine kinase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.449 |
SDS73148.1 | SDT54498.1 | SAMN04490182_2244 | SAMN04490182_5320 | Phosphoglucomutase. | Phosphomannomutase. | 0.985 |
SDS73148.1 | nudF | SAMN04490182_2244 | SAMN04490182_6028 | Phosphoglucomutase. | ADP-ribose pyrophosphatase. | 0.948 |
SDS73148.1 | prs | SAMN04490182_2244 | SAMN04490182_6262 | Phosphoglucomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.938 |
SDT47715.1 | SDS59498.1 | SAMN04490182_4858 | SAMN04490182_1905 | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | Signal transduction histidine kinase. | 0.508 |
SDT47715.1 | nudF | SAMN04490182_4858 | SAMN04490182_6028 | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | ADP-ribose pyrophosphatase. | 0.803 |
SDT47715.1 | prs | SAMN04490182_4858 | SAMN04490182_6262 | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.476 |
SDT54498.1 | SDS73148.1 | SAMN04490182_5320 | SAMN04490182_2244 | Phosphomannomutase. | Phosphoglucomutase. | 0.985 |
SDT54498.1 | SDT61229.1 | SAMN04490182_5320 | SAMN04490182_5774 | Phosphomannomutase. | ADP-ribose diphosphatase. | 0.946 |
SDT54498.1 | nudF | SAMN04490182_5320 | SAMN04490182_6028 | Phosphomannomutase. | ADP-ribose pyrophosphatase. | 0.946 |
SDT54498.1 | prs | SAMN04490182_5320 | SAMN04490182_6262 | Phosphomannomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.957 |
SDT61229.1 | SDS59498.1 | SAMN04490182_5774 | SAMN04490182_1905 | ADP-ribose diphosphatase. | Signal transduction histidine kinase. | 0.508 |
SDT61229.1 | SDT54498.1 | SAMN04490182_5774 | SAMN04490182_5320 | ADP-ribose diphosphatase. | Phosphomannomutase. | 0.946 |
SDT61229.1 | nudF | SAMN04490182_5774 | SAMN04490182_6028 | ADP-ribose diphosphatase. | ADP-ribose pyrophosphatase. | 0.957 |
SDT61229.1 | prs | SAMN04490182_5774 | SAMN04490182_6262 | ADP-ribose diphosphatase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.933 |
SDT63940.1 | nudF | SAMN04490182_6029 | SAMN04490182_6028 | Hypothetical protein. | ADP-ribose pyrophosphatase. | 0.914 |
deaD | nudF | SAMN04490182_0938 | SAMN04490182_6028 | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | ADP-ribose pyrophosphatase. | 0.801 |
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