STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT63999.1Hypothetical protein. (236 aa)    
Predicted Functional Partners:
SDS85023.1
Protein of unknown function.
  
     0.756
SDT63729.1
GlcNAc-PI de-N-acetylase.
  
     0.751
SDS25621.1
Hypothetical protein.
  
     0.717
SDR88752.1
Alginate biosynthesis protein AlgK.
  
     0.687
SDS21371.1
Hypothetical protein.
  
     0.682
SDR88652.1
poly(beta-D-mannuronate) C5 epimerase.
  
     0.681
SDS68316.1
Protein of unknown function.
  
     0.653
SDT52279.1
Uncharacterized protein YjiK.
  
     0.647
SDR88624.1
Alginate biosynthesis protein AlgX.
  
     0.643
SDR98164.1
Protein of unknown function.
  
   
 0.634
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.