STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT65262.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (297 aa)    
Predicted Functional Partners:
SDS59498.1
Signal transduction histidine kinase.
 
 0.978
SDS95684.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 
0.975
SDS19334.1
Two-component system, NarL family, sensor histidine kinase EvgS.
 
 
 0.968
SDS72055.1
Two-component system, cell cycle response regulator DivK.
 
 0.964
SDS33787.1
Two-component system, NarL family, sensor histidine kinase EvgS.
 
 
 0.963
SDS72017.1
Signal transduction histidine kinase.
 
 
 0.944
SDS69606.1
Signal transduction histidine kinase.
 
0.940
SDT48226.1
PAS domain S-box-containing protein.
 
 0.937
SDR89980.1
Hpt domain-containing protein.
 
 
 0.936
SDT65239.1
PAS domain S-box-containing protein.
 
 0.936
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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