STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT65297.1Tight adherence protein B. (293 aa)    
Predicted Functional Partners:
SDT65315.1
Pilus assembly protein CpaE.
 
  
 0.995
cpaB
Pilus assembly protein CpaB.
 
  
 0.992
SDT65305.1
Pilus assembly protein CpaF.
 
  
 0.989
SDT65325.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.978
SDT65276.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
  
 0.963
SDT65287.1
Tight adherence protein C.
 
     0.955
SDT65246.1
TadE-like protein.
 
  
 0.942
SDT65271.1
Protein of unknown function.
  
    0.770
SDT65230.1
Uncharacterized membrane protein.
 
  
 0.761
SDT65343.1
Pilus assembly protein Flp/PilA.
  
  
 0.675
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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