STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT66146.1Short-chain dehydrogenase. (259 aa)    
Predicted Functional Partners:
SDS42836.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 0.972
SDT66165.1
DNA-binding transcriptional regulator, MerR family.
 
   
 0.786
SDT62996.1
Glutamate synthase (NADPH) large subunit.
    
  0.779
SDT58910.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
  
 
 0.739
SDT66178.1
Uncharacterized conserved protein YbgA, DUF1722 family.
       0.704
SDT66155.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
  
    0.691
SDT38565.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.658
SDT63251.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
     
 0.635
SDT66138.1
Putative zinc-or iron-chelating domain-containing protein.
       0.634
SDS77366.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.610
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.