STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT66178.1Uncharacterized conserved protein YbgA, DUF1722 family. (319 aa)    
Predicted Functional Partners:
SDT66155.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
  
  
 0.990
SDT66165.1
DNA-binding transcriptional regulator, MerR family.
  
  
 0.915
SDT66146.1
Short-chain dehydrogenase.
       0.704
SDS36696.1
N-methylglutamate dehydrogenase subunit C.
   
   0.686
SDT07642.1
Sarcosine oxidase subunit alpha.
   
   0.686
SDT66190.1
Tryptophan-rich conserved hypothetical protein.
       0.674
SDS59829.1
2,4-dienoyl-CoA reductase.
   
   0.670
SDT66201.1
Hypothetical protein; Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P)+. May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers; Belongs to the bacterial renalase family.
       0.668
SDS47706.1
Thioredoxin reductase.
   
   0.657
trxB
Thioredoxin reductase (NADPH).
   
   0.657
Your Current Organism:
Pseudomonas cedrina
NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3
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