STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40494.1Transcriptional regulator. (625 aa)    
Predicted Functional Partners:
dhaK
Dihydroxyacetone kinase subunit DhaK.
   
 
 0.912
dhaL
Dihydroxyacetone kinase.
   
 
 0.837
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.830
ALP39871.1
Regulatory protein LysR; Belongs to the LysR transcriptional regulatory family.
       0.586
rbsC
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
    0.436
mglA2
Sugar ABC transporter ATP-binding protein.
   
  
 0.426
rbsA
D-ribose transporter ATP binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
   
  
 0.426
dhaM
Dihydroxyacetone kinase, phosphotransferase subunit.
 
   
 0.425
ALP41390.1
Agmatine deiminase; Belongs to the agmatine deiminase family.
       0.424
ALP43298.1
Carbon starvation protein CstA.
   
    0.412
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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