STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40608.1Outer membrane protein. (652 aa)    
Predicted Functional Partners:
ALP40204.1
Cystathionine beta-synthase.
 
 
 0.986
ALP43693.1
deCa-heme c-type cytochrome.
 
   
 0.925
ALP42449.1
Cytochrome c-type protein.
 
 
 0.851
skp
Outer membrane protein OmpH; Belongs to the skp family.
    
 
 0.784
ALP40084.1
MFS transporter.
  
   
 0.761
napC
Periplasmic nitrate reductase c subunit.
  
 
 0.751
torC
Trimethylamine N-oxide reductase cytochrome c-type subunit; Belongs to the TorC/TorY family.
  
 
 0.751
ALP39644.1
Type I secretion protein.
  
  
 0.746
ALP42828.1
Aconitase.
  
     0.718
ALP42141.1
Siderophore synthetase component.
  
     0.716
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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