STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40636.1Hypothetical protein; Belongs to the UPF0102 family. (102 aa)    
Predicted Functional Partners:
diaA
Phosphoheptose isomerase.
  
  
 0.822
ALP39729.1
LppC family lipoprotein.
     
 0.817
ALP43397.1
Secreted protein.
     
 0.797
comF
Competence protein ComF.
 
    0.756
ALP40720.1
ATP-dependent protease.
 
  
 0.651
comM
ATP-dependent protease.
 
  
 0.630
smf
DNA protecting protein DprA.
 
    0.595
ALP42953.1
Hypothetical protein.
  
    0.591
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.579
ALP40288.1
Sensory box/GGDEF domain/eal domain-containing protein.
   
    0.508
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.