Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP40725.1Sensory box protein. (332 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.914
ALP42115.1
Hypothetical protein.
 
 
 0.908
ALP40288.1
Sensory box/GGDEF domain/eal domain-containing protein.
 
 
 0.903
barA
Hybrid sensory histidine kinase BarA.
 
 
 0.886
ALP40015.1
Regulatory protein CsrD.
 
 
 0.879
yahA
Diguanylate phosphodiesterase.
 
 0.870
ALP40189.1
Cyclic diguanylate phosphodiesterase domain-containing protein.
 
 0.865
ALP41090.1
Diguanylate phosphodiesterase.
 
 0.846
ALP42102.1
Hypothetical protein.
 
 0.837
ALP41039.1
Tmao reductase sytem sensor tors.
 
 
 0.834
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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