STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40790.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
ALP39851.1
MSHA biogenesis protein MshI.
  
 
 0.951
ALP40827.1
Type IV pilus biogenesis protein PilO.
  
 
 0.900
ALP41442.1
Type IV pilus biogenesis protein TapP.
  
 
 0.899
ALP39878.1
Type IV pilus secretin PilQ.
  
 
 0.890
ALP42325.1
Pilus assembly protein PilM.
  
 
 0.851
epsE
Type IV pilin.
   
 
 0.805
ALP40887.1
MSHA biogenesis protein MshK.
       0.795
ALP42351.1
Msha biogenesis protein mshj.
       0.795
ALP43262.1
GspF family protein.
   
 
 0.770
ALP43713.1
Msha biogenesis protein mshl.
     
 0.723
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.