STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40804.1Peptide ABC transporter substrate-binding protein. (509 aa)    
Predicted Functional Partners:
ALP41168.1
Peptide ABC transporter permease.
 
 0.938
ALP42078.1
Dipeptide transport system permease DppC.
 
 0.938
gsiA
Dipeptide transport ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 
  
 0.848
nifJ
Ferredoxin oxidoreductase.
  
    0.819
ALP41472.1
Peptide ABC transporter permease.
 
 
 0.681
ALP42631.1
Peptide ABC transporter permease.
 
 
 0.677
ALP42784.1
Peptide ABC transporter permease.
 
 0.653
ALP43290.1
Peptide ABC transporter permease.
 
 
 0.637
WL1483_28
Oligopeptide transport system permease OppB.
 
 0.606
oppB
Oligopeptide transporter permease.
 
 0.578
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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