STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40814.1Hypothetical protein. (1056 aa)    
Predicted Functional Partners:
ALP42354.1
Acetyltransferase.
       0.773
ALP43602.1
Two-component system response regulator.
       0.773
barA
Hybrid sensory histidine kinase BarA.
 
 
0.644
cpxR
Transcriptional regulatory protein CpxR.
  
 
   0.635
arcB
Aerobic respiration control sensor protein ArcB.
 
 
0.635
cobB
NAD-dependent protein deacetylase, Sir2 family; Belongs to the sirtuin family. Class III subfamily.
       0.626
glnL
Nitrogen regulation protein NR(II).
 
 
 0.624
tctD
Transcriptional regulator.
  
 
   0.616
ihfA
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
 
 0.602
ALP42115.1
Hypothetical protein.
 
 
0.592
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.