STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sycNMolecular chaperone. (123 aa)    
Predicted Functional Partners:
yopN
Type III secretion protein.
  
    0.961
lcrD
AscV protein.
  
    0.946
yscX
Yop proteins translocation protein X.
  
    0.942
lcrH
Low calcium response locus protein H.
  
  
 0.927
ALP42129.1
Hypothetical protein.
  
    0.907
yscO
Type III secretion system translocation protein.
  
    0.906
lcrV
Virulence-associated V antigen.
  
    0.905
lcrR
Low calcium response locus protein R.
  
    0.902
ALP42888.1
Hypothetical protein.
  
    0.895
yscS
Preprotein translocase S.
  
    0.841
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.