STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfsBWinged helix-turn-helix DNA-binding family protein. (76 aa)    
Predicted Functional Partners:
ALP41345.1
DDE endonuclease.
 
   
 0.872
ALP42283.1
DNA transposition protein.
 
   
 0.826
ALP41647.1
Sulfate transporter.
 
    0.800
ALP40596.1
Transcriptional regulator.
 
     0.754
ALP40665.1
Phage baseplate protein.
  
     0.710
ALP41899.1
Phage baseplate protein.
  
     0.709
ALP40257.1
Hypothetical protein.
 
     0.708
WL1483_91
Hypothetical protein.
 
    0.705
ALP42603.1
Hypothetical protein.
 
     0.698
ALP42759.1
Phage tail protein.
 
     0.691
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.