STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmfCFimbrial assembly protein. (534 aa)    
Predicted Functional Partners:
papD
Molecular chaperone.
 
 
 0.995
ALP39938.1
Type I pilus assembly protein FimF.
 
 
 0.988
mrpA
Fimbrial protein.
 
 
 0.967
ALP41583.1
Fimbrial protein.
  
 
 0.889
ALP43501.1
Porin.
  
     0.716
ALP43098.1
Hypothetical protein.
  
    0.681
ALP41456.1
Hypothetical protein.
  
  
 0.652
arnF
4-amino-4-deoxy-L-arabinose-phospho-UDP flippase.
  
     0.646
ALP43597.1
Hypothetical protein.
  
     0.636
arnT
UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
     0.630
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.