Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP39570.1Hypothetical protein. (192 aa)    
Predicted Functional Partners:
ALP43172.1
Hypothetical protein.
 
     0.846
ALP42842.1
Hypothetical protein.
  
    0.799
ALP40033.1
Hypothetical protein.
  
    0.799
mrcB
Peptidase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
    
 
 0.784
ALP41392.1
HIT family hydrolase.
  
  
 0.686
ALP43726.1
Two-component system response regulator.
    
   0.649
ALP43673.1
Hypothetical protein.
       0.565
ALP39675.1
Hypothetical protein.
  
     0.515
ALP40448.1
Homogentisate 1, 2-dioxygenase.
   
    0.499
ALP40581.1
Hypothetical protein.
  
     0.486
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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