STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP40974.1Type III secretion system needle protein SsaG. (73 aa)    
Predicted Functional Partners:
ALP41220.1
Hypothetical protein.
  
  
 0.956
yscF
Type III secretion apparatus needle protein YscF.
     
  0.900
ALP42169.1
Hypothetical protein.
     
 0.802
ALP42793.1
Hypothetical protein.
       0.800
ALP39883.1
Hypothetical protein.
       0.800
ALP41919.1
Hypothetical protein.
       0.773
ALP40233.1
Hypothetical protein.
       0.773
ALP40460.1
Hypothetical protein.
     
 0.747
spiA
Type II secretory pathway protein.
    
 0.665
ALP42829.1
Hypothetical protein.
     
 0.522
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.