STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP41005.1Ligand-gated channel protein. (700 aa)    
Predicted Functional Partners:
ALP40712.1
Periplasmic protein TonB2.
 
 
 0.985
ALP41760.1
Iron-regulated protein.
 
  
 0.908
ALP40337.1
Hypothetical protein.
  
 
 0.901
ALP41456.1
Hypothetical protein.
  
 
 
 0.856
ALP40681.1
Colicin receptor.
 
  
0.795
exbD2
TonB system transport protein ExbD2.
 
  
 0.757
ALP43222.1
Biopolymer transporter ExbB.
 
  
 0.716
ALP43540.1
TolQ proton channel protein.
 
  
 0.684
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.682
ALP43405.1
HutZ protein.
 
  
 0.646
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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