STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP41086.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
hdfR
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.817
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.721
ALP43675.1
MSHA biogenesis protein MshN/MshD.
  
     0.676
ALP42396.1
MSHA biogenesis protein MshP.
  
     0.654
ALP40560.1
MSHA biogenesis protein MshO.
  
     0.596
uspE
Universal stress protein UspE.
  
     0.593
ALP43517.1
Pilin.
  
     0.592
ALP39612.1
MshQ protein.
  
     0.579
ALP43146.1
Diguanylate cyclase.
  
     0.572
ALP43713.1
Msha biogenesis protein mshl.
  
     0.553
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.