STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrfBFormate-dependent nitrite reductase, penta-heme cytochrome c. (183 aa)    
Predicted Functional Partners:
nrfD
Protein NrfD.
 
  
 0.982
nrfA
Cytochrome c nitrite reductase subunit c552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.978
nrfC
Formate-dependent nitrite reductase, 4Fe4S subunit.
 
  
 0.895
torC
Trimethylamine N-oxide reductase cytochrome c-type subunit; Belongs to the TorC/TorY family.
 
 
 0.809
nrfG
Formate-dependent nitrite reductase complex nrfG subunit; Possible subunit of a heme lyase.
 
  
 0.788
ALP42449.1
Cytochrome c-type protein.
 
 
 0.759
napC
Periplasmic nitrate reductase c subunit.
 
 
 0.752
ALP40204.1
Cystathionine beta-synthase.
 
 
0.725
ALP43150.1
Hypothetical protein.
  
     0.722
ALP43573.1
valyl-tRNA synthetase; Belongs to the UPF0267 family.
  
     0.714
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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