STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP41152.1AraC family transcriptional regulator. (293 aa)    
Predicted Functional Partners:
ALP39745.1
AraC family transcriptional regulator.
  
     0.749
ALP39921.1
AraC/XylS family transcriptional regulator.
  
     0.684
virF
AraC family transcriptional regulator.
  
     0.681
ALP40233.1
Hypothetical protein.
  
     0.608
ALP41340.1
AraC family transcriptional regulator.
  
     0.575
manA
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
       0.544
ALP42493.1
DNA gyrase inhibitor.
 
     0.532
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.521
uhpB
Histidine kinase.
  
     0.449
yqhC
Putative HTH-type transcriptional regulator YqhC.
  
     0.424
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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