STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP41235.1Type IV pilin. (203 aa)    
Predicted Functional Partners:
ALP42013.1
Type IV pilin.
 
   
 0.948
ALP43215.1
Type IV pilin.
 
   
 0.945
ALP42345.1
Hypothetical protein.
  
 
 0.887
exeK
General secretion pathway protein K.
  
 
 0.887
ALP39968.1
Type IV pilin.
 
   
 0.853
WL1483_93
Hypothetical protein.
     
 0.817
ALP40560.1
MSHA biogenesis protein MshO.
  
 
 0.616
exeH
General secretion pathway protein H.
  
 
 0.616
exeI
General secretion pathway protein I.
  
 
 0.616
exeG
General secretion pathway protein GspG.
  
 
 0.616
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.