Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpfGChemotaxis protein CheY. (478 aa)    
Predicted Functional Partners:
ALP43038.1
Hypothetical protein.
 
 
 0.923
ALP41064.1
Sensory box protein.
 
 0.907
ALP39573.1
Diguanylate cyclase.
  
 0.896
ALP42115.1
Hypothetical protein.
 
 
 0.864
ALP40397.1
Hypothetical protein.
 
 0.847
ALP40816.1
Diguanylate cyclase.
 
 
 0.794
ALP40288.1
Sensory box/GGDEF domain/eal domain-containing protein.
 
 
 0.773
ALP40725.1
Sensory box protein.
 
 0.771
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.735
ALP41765.1
PAS/PAC sensor-containing diguanylate cyclase.
   0.734
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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