STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP41306.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
ALP41983.1
Hypothetical protein; Belongs to the UPF0276 family.
 
  
 0.988
ALP40695.1
Membrane protein.
 
  
 0.973
ALP42616.1
Membrane protein.
 
  
 0.971
ALP40172.1
Hypothetical protein.
 
  
 0.947
ALP42916.1
Inner membrane protein YqjA.
       0.548
ALP43586.1
AraC family transcriptional regulator.
  
  
 0.537
yqjF
DoxX family protein.
  
  
 0.519
ALP39973.1
Hypothetical protein.
       0.433
ssaV
Secretion system apparatus protein SsaV.
   
    0.424
lcrD
AscV protein.
   
    0.424
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.