STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpGD-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (298 aa)    
Predicted Functional Partners:
nrfE
Cytochrome c-type biogenesis protein CcmF.
       0.566
ALP43560.1
Hypothetical protein.
       0.566
ALP39893.1
Hypothetical protein.
       0.566
nrfG
Formate-dependent nitrite reductase complex nrfG subunit; Possible subunit of a heme lyase.
       0.566
ftsI
Peptidoglycan synthetase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.
 
  
 0.443
nrfD
Protein NrfD.
       0.431
nrfB
Formate-dependent nitrite reductase, penta-heme cytochrome c.
       0.431
nrfC
Formate-dependent nitrite reductase, 4Fe4S subunit.
       0.431
ftsW
Cell division protein FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
 
   
 0.425
ALP40866.1
Hypothetical protein.
       0.414
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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