Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP41424.1Outer membrane protein. (333 aa)    
Predicted Functional Partners:
ALP42134.1
Lipoprotein VacJ.
   
 
 0.790
ALP42019.1
Hypothetical protein.
  
 
   0.774
ALP43126.1
Putative SerB-cotransposed membrane protein.
  
   
 0.768
ALP42386.1
Fermentation/respiration switch protein; Belongs to the UPF0255 family.
  
  
 0.768
ALP40156.1
Hypothetical protein.
  
     0.758
ALP41397.1
Hypothetical protein.
  
     0.750
ALP42196.1
Hypothetical protein.
  
     0.746
crl
DNA-binding transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.733
ALP40427.1
Hypothetical protein; Belongs to the UPF0319 family.
 
     0.707
ALP39607.1
Lipoprotein.
  
   
 0.698
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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