Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALP39624.1Hypothetical protein. (55 aa)    
Predicted Functional Partners:
ALP40752.1
Hypothetical protein.
       0.697
ALP39966.1
ABC transporter substrate-binding protein.
   
   0.617
flgE
Flagellar hook protein FlgE.
   
 
 0.559
ALP42007.1
Flagellar hook protein FlgE.
   
 
 0.559
flgG
Lateral flagellar basal-body rod protein LfgG; Belongs to the flagella basal body rod proteins family.
   
   0.551
mccA
methylcrotonoyl-CoA carboxylase.
   
   0.500
ALP43029.1
MerR family transcriptional regulator.
  
    0.487
flgC
Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.485
flgC-2
Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.485
ALP42662.1
enoyl-CoA hydratase/isomerase family protein.
       0.484
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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