STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP41671.1MSHA biogenesis protein MshC. (163 aa)    
Predicted Functional Partners:
ALP43675.1
MSHA biogenesis protein MshN/MshD.
 
  
 0.913
ALP42396.1
MSHA biogenesis protein MshP.
 
  
 0.905
ALP39612.1
MshQ protein.
 
     0.887
ALP40560.1
MSHA biogenesis protein MshO.
 
  
 0.886
ALP42013.1
Type IV pilin.
 
  
 0.861
WL1483_47
Hypothetical protein.
 
     0.814
ALP41744.1
MSHA biogenesis protein MshA.
 
  
 0.799
ALP42351.1
Msha biogenesis protein mshj.
 
     0.781
ALP39968.1
Type IV pilin.
  
  
 0.739
ALP39851.1
MSHA biogenesis protein MshI.
 
   
 0.717
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.