STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFCompetence protein ComF. (159 aa)    
Predicted Functional Partners:
smf
DNA protecting protein DprA.
 
 
 0.937
ALP42117.1
Competence protein ComEC.
 
  
 0.899
comM
ATP-dependent protease.
 
  
 0.840
ALP40720.1
ATP-dependent protease.
 
  
 0.826
ALP42115.1
Hypothetical protein.
  
  
 0.817
ALP39704.1
Hypothetical protein; Belongs to the UPF0758 family.
 
    0.811
tyrA
Bifunctional chorismate mutase/prephenate dehydrogenase.
  
  
 0.796
ALP41372.1
DNA repair protein RadC.
 
    0.788
ALP42953.1
Hypothetical protein.
  
    0.777
ALP40636.1
Hypothetical protein; Belongs to the UPF0102 family.
 
    0.756
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.