STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yscDType III secretion apparatus protein, YscD/HrpQ family. (427 aa)    
Predicted Functional Partners:
yscG
Type 3 secretion protein AscG.
  
    0.899
yscJ
Preproteins translocase J.
  
  
 0.898
yscF
Type III secretion apparatus needle protein YscF.
  
    0.896
yscI
Preprotein translocase I.
  
  
 0.890
yscK
Type III secretion cytoplasmic protein (YscK).
  
  
 0.885
yscC
Type III secretion outer membrane pore, YscC/HrcC family.
  
  
 0.866
yscL
Type III secretion apparatus protein, HrpE/YscL family.
  
 
 0.828
sucA
2-oxoglutarate dehydrogenase E1 component.
    
 
 0.794
ALP43385.1
ExsD protein.
  
    0.786
gltB
Glutamate synthase subunit alpha.
    
   0.737
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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