STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP41765.1PAS/PAC sensor-containing diguanylate cyclase. (315 aa)    
Predicted Functional Partners:
ALP41090.1
Diguanylate phosphodiesterase.
 
     0.971
ALP40189.1
Cyclic diguanylate phosphodiesterase domain-containing protein.
    0.939
yahA
Diguanylate phosphodiesterase.
    0.926
ALP40015.1
Regulatory protein CsrD.
 
  
 0.771
ALP41709.1
Hypothetical protein.
 
    0.762
rpfG
Chemotaxis protein CheY.
   0.745
ALP41690.1
Hypothetical protein.
  
    0.721
ALP40745.1
Metal-dependent phosphohydrolase with HD domain.
 
     0.709
ALP39595.1
Hypothetical protein.
 
     0.653
ALP40852.1
Response regulator/sensory box/hdig domain-containing protein.
 
     0.633
Your Current Organism:
Aeromonas schubertii
NCBI taxonomy Id: 652
Other names: A. schubertii, ATCC 43700, Aeromonas hybridization group 12, CCUG 27820, CDC 2446-81, CECT 4240, CIP 103437, DSM 4882, Enteric Group 501, JCM 7373, LMG 9074, LMG:9074
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